PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_013142-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 267aa    MW: 29266.5 Da    PI: 6.8354
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_013142-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.00021101123123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C + F ++  L  H++ H
  NNU_013142-RA 101 FSCNYCQRKFYSSQALGGHQNAH 123
                    89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.76E-698128No hitNo description
PROSITE profilePS5015711.427101128IPR007087Zinc finger, C2H2
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MEPQHIEPCL SETSSIISVP EAQPSLDGSE KQQKGERQQP EGEETLQEET NPDLLLDLSL  60
SHKDSSHGSK PELNLIDCLS VGASETSPEI PQGTEAEPRV FSCNYCQRKF YSSQALGGHQ  120
NAHKRERTLA KRGHRMGAAA AAFGHSQSHY HRFSSLASLP LHGSFSRSLG IQVHSMIHKP  180
SGHLYGHHEW SRSPINQQPA IGRLAMTDYH VGVSAGSSSR GGAARFDTSR MFSPPMEEGI  240
SGYWWAASGG MKTNQEELQK LDLSLKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010265671.10.0PREDICTED: zinc finger protein 1-like
SwissprotQ392626e-48ZFP3_ARATH; Zinc finger protein 3
TrEMBLA5BQW11e-118A5BQW1_VITVI; Putative uncharacterized protein
TrEMBLF6HXT41e-118F6HXT4_VITVI; Putative uncharacterized protein
STRINGVIT_09s0002g09080.t011e-118(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.14e-51C2H2 family protein